REVIEWS:

Fritha Hennessy, William S. Nicoll, Richard Zimmermann, Michael E. Cheetham, and Gregory L. Blatch

Not all J domains are created equal: Implications for the specificity of Hsp40–Hsp70 interactions
Protein Sci 2005 14: 1697-1709. [Abstract] [Full Text] [PDF]  

ARTICLES:

Luis A. Alcaraz, Beatriz Jiménez, José María Moratal, and Antonio Donaire

An NMR view of the unfolding process of rusticyanin: Structural elements that maintain the architecture of a -barrel metalloprotein
Protein Sci 2005 14: 1710-1722. [Abstract] [Full Text] [PDF]  

Andreas Bernsel and Gunnar Von Heijne

Improved membrane protein topology prediction by domain assignments
Protein Sci 2005 14: 1723-1728. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Nicklas Bonander, Kristina Hedfalk, Christer Larsson, Petter Mostad, Celia Chang, Lena Gustafsson, and Roslyn M. Bill

Design of improved membrane protein production experiments: Quantitation of the host response
Protein Sci 2005 14: 1729-1740. [Abstract] [Full Text] [PDF]  

William W. Chen and Eugene I. Shakhnovich

Lessons from the design of a novel atomic potential for protein folding
Protein Sci 2005 14: 1741-1752. [Abstract] [Full Text] [PDF]  

Peter Hortschansky, Volker Schroeckh, Tony Christopeit, Giorgia Zandomeneghi, and Marcus Fändrich

The aggregation kinetics of Alzheimer’s -amyloid peptide is controlled by stochastic nucleation
Protein Sci 2005 14: 1753-1759. Published in Advance June 3, 2005, 10.1110/ps.041266605 [Abstract] [Full Text] [PDF]  

Nikos G. Oikonomakos, Magda N. Kosmopoulou, Evangelia D. Chrysina, Demetres D. Leonidas, Ioannis D. Kostas, K. Ulrich Wendt, Thomas Klabunde, and Elisabeth Defossa

Crystallographic studies on acyl ureas, a new class of glycogen phosphorylase inhibitors, as potential antidiabetic drugs
Protein Sci 2005 14: 1760-1771. [Abstract] [Full Text] [PDF]  

B.P. Pandey, Chi Zhang, Xianzhang Yuan, Jian Zi, and Yaoqi Zhou

Protein flexibility prediction by an all-atom mean-field statistical theory
Protein Sci 2005 14: 1772-1777. [Abstract] [Full Text] [PDF]  

Luis E. Rodríguez, Hernando Curtidor, Marisol Ocampo, Javier Garcia, Alvaro Puentes, John Valbuena, Ricardo Vera, Ramses López, and Manuel E. Patarroyo

Identifying Plasmodium falciparum merozoite surface antigen 3 (MSP3) protein peptides that bind specifically to erythrocytes and inhibit merozoite invasion
Protein Sci 2005 14: 1778-1786. [Abstract] [Full Text] [PDF]  

Anoop M. Saxena, Jayant B. Udgaonkar, and Guruswamy Krishnamoorthy

Protein dynamics control proton transfer from bulk solvent to protein interior: A case study with a green fluorescent protein
Protein Sci 2005 14: 1787-1799. Published in Advance June 3, 2005, 10.1110/ps.051391205 [Abstract] [Full Text] [PDF]  

Ian Sillitoe, Mark Dibley, James Bray, Sarah Addou, and Christine Orengo

Assessing strategies for improved superfamily recognition
Protein Sci 2005 14: 1800-1810. Published in Advance June 3, 2005, 10.1110/ps.041056105 [Abstract] [Full Text] [PDF]  

Limin Wang and Wilfredo Colón

Urea-induced denaturation of apolipoprotein serum amyloid A reveals marginal stability of hexamer
Protein Sci 2005 14: 1811-1817. Published in Advance June 3, 2005, 10.1110/ps.051387005 [Abstract] [Full Text] [PDF]  

Melissa Swope Willis, James K. Hogan, Prakash Prabhakar, Xun Liu, Kuenhi Tsai, Yunyi Wei, and Ted Fox

Investigation of protein refolding using a fractional factorial screen: A study of reagent effects and interactions
Protein Sci 2005 14: 1818-1826. Published in Advance June 3, 2005, 10.1110/ps.051433205 [Abstract] [Full Text] [PDF]  

Béatrice Alpha-Bazin, Alain Lorphelin, Nathalie Nozerand, Gaëlle Charier, Charles Marchetti, Frédéric Bérenguer, Joël Couprie, Bernard Gilquin, Sophie Zinn-Justin, and Eric Quéméneur

Boundaries and physical characterization of a new domain shared between mammalian 53BP1 and yeast Rad9 checkpoint proteins
Protein Sci 2005 14: 1827-1839. [Abstract] [Full Text] [PDF]  

Stephan W. Aufhammer, Eberhard Warkentin, Ulrich Ermler, Christoph H. Hagemeier, Rudolf K. Thauer, and Seigo Shima

Crystal structure of methylenetetrahydromethanopterin reductase (Mer) in complex with coenzyme F₄₂₀: Architecture of the F₄₂₀/FMN binding site of enzymes within the nonprolyl cis-peptide containing bacterial luciferase family
Protein Sci 2005 14: 1840-1849. Published in Advance June 3, 2005, 10.1110/ps.041289805 [Abstract] [Full Text] [PDF]  

Alina Castell, Patrik Johansson, Torsten Unge, T. Alwyn Jones, and Kristina Bäckbro

Rv0216, a conserved hypothetical protein from Mycobacterium tuberculosis that is essential for bacterial survival during infection, has a double hotdog fold
Protein Sci 2005 14: 1850-1862. [Abstract] [Full Text] [PDF]  

Jean-Francois Collet, Daniel Peisach, James C.A. Bardwell, and Zhaohui Xu

The crystal structure of TrxA(CACA): Insights into the formation of a [2Fe-2S] iron–sulfur cluster in an Escherichia coli thioredoxin mutant
Protein Sci 2005 14: 1863-1869. [Abstract] [Full Text] [PDF]  

Ron M. Kagan, Mark D. Shenderovich, Peter N.R. Heseltine, and Kal Ramnarayan

Structural analysis of an HIV-1 protease I47A mutant resistant to the protease inhibitor lopinavir
Protein Sci 2005 14: 1870-1878. Published in Advance June 3, 2005, 10.1110/ps.051347405 [Abstract] [Full Text] [PDF]  

Malgorzata Palczewska, Gyula Batta, Patrick Groves, Sara Linse, and Jacek Kuznicki

Characterization of calretinin I–II as an EF-hand, Ca²⁺, H⁺-sensing domain
Protein Sci 2005 14: 1879-1887. Published in Advance June 3, 2005, 10.1110/ps.051369805 [Abstract] [Full Text] [PDF]  

PROTEIN STRUCTURE REPORTS:

Ryoichi Arai, Mutsuko Kukimoto-Niino, Hiroko Uda-Tochio, Satoshi Morita, Tomomi Uchikubo-Kamo, Ryogo Akasaka, Yuuka Etou, Yoshihide Hayashizaki, Takanori Kigawa, Takaho Terada, Mikako Shirouzu, and Shigeyuki Yokoyama

Crystal structure of an enhancer of rudimentary homolog (ERH) at 2.1 Å resolution
Protein Sci 2005 14: 1888-1893. Published in Advance June 3, 2005, 10.1110/ps.051484505 [Abstract] [Full Text] [PDF]  

Deepa V. Venkitaramani, D. Bruce Fulton, Amy H. Andreotti, Kristen M. Johansen, and Jørgen Johansen

Solution structure and backbone dynamics of Calsensin, an invertebrate neuronal calcium-binding protein
Protein Sci 2005 14: 1894-1901. Published in Advance June 3, 2005, 10.1110/ps.051412605 [Abstract] [Full Text] [PDF]  

FOR THE RECORD:

Hua Cheng and Nick V. Grishin

DOM-fold: A structure with crossing loops found in DmpA, ornithine acetyltransferase, and molybdenum cofactor-binding domain
Protein Sci 2005 14: 1902-1910. Published in Advance June 3, 2005, 10.1110/ps.051364905 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Patrick J. Fleming and George D. Rose

Do all backbone polar groups in proteins form hydrogen bonds?
Protein Sci 2005 14: 1911-1917. Published in Advance June 3, 2005, 10.1110/ps.051454805 [Abstract] [Full Text] [PDF]  

Christoph Grundner, Laurie M. Gay, and Tom Alber

Mycobacterium tuberculosis serine/threonine kinases PknB, PknD, PknE, and PknF phosphorylate multiple FHA domains
Protein Sci 2005 14: 1918-1921. [Abstract] [Full Text] [PDF]  

Xue Li, Robin J. Hood, William J. Wedemeyer, and J. Throck Watson

Characterization of peptide folding nuclei by hydrogen/deuterium exchange-mass spectrometry
Protein Sci 2005 14: 1922-1928. [Abstract] [Full Text] [PDF]  

Jessica Radzio and Nicolas Sluis-Cremer

Stereo-selectivity of HIV-1 reverse transcriptase toward isomers of thymidine-5'-O-1-thiotriphosphate
Protein Sci 2005 14: 1929-1933. Published in Advance June 3, 2005, 10.1110/ps.051445605 [Abstract] [Full Text] [PDF]  

Jared M. Trefethen, C. Nick Pace, J. Martin Scholtz, and David N. Brems

Charge–charge interactions in the denatured state influence the folding kinetics of ribonuclease Sa
Protein Sci 2005 14: 1934-1938. Published in Advance June 3, 2005, 10.1110/ps.051401905 [Abstract] [Full Text] [PDF]  

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