REVIEWS:

Andrei T. Alexandrescu

Amyloid accomplices and enforcers
Protein Sci 2005 14: 1-12. Published in Advance December 2, 2004, 10.1110/ps.04887005 [Abstract] [Full Text] [PDF]  

ARTICLES:

Matthew J. Blades, Jon C. Ison, Ranjeeva Ranasinghe, and John B.C. Findlay

Automatic generation and evaluation of sparse protein signatures for families of protein structural domains
Protein Sci 2005 14: 13-23. [Abstract] [Full Text] [PDF]  

Kakoli Bose and A. Clay Clark

pH effects on the stability and dimerization of procaspase-3
Protein Sci 2005 14: 24-36. Published in Advance December 2, 2004, 10.1110/ps.041003305 [Abstract] [Full Text] [PDF]  

Michael Kothe, Cristina Purcarea, Hedeel I. Guy, David R. Evans, and Susan G. Powers-Lee

Direct demonstration of carbamoyl phosphate formation on the C-terminal domain of carbamoyl phosphate synthetase
Protein Sci 2005 14: 37-44. Published in Advance December 2, 2004, 10.1110/ps.041041305 [Abstract] [Full Text] [PDF]  

Veniamin N. Lapko, Ronald L. Cerny, David L. Smith, and Jean B. Smith

Modifications of human A1/A3-crystallins include S-methylation, glutathiolation, and truncation
Protein Sci 2005 14: 45-54. Published in Advance December 2, 2004, 10.1110/ps.04738505 [Abstract] [Full Text] [PDF]  

Yu-Ran Na and Hana Im

The length of the reactive center loop modulates the latency transition of plasminogen activator inhibitor-1
Protein Sci 2005 14: 55-63. Published in Advance December 2, 2004, 10.1110/ps.041063705 [Abstract] [Full Text] [PDF]  

J. Jefferson Smith, David W. Conrad, Matthew J. Cuneo, and Homme W. Hellinga

Orthogonal site-specific protein modification by engineering reversible thiol protection mechanisms
Protein Sci 2005 14: 64-73. Published in Advance December 2, 2004, 10.1110/ps.04965405 [Abstract] [Full Text] [PDF]  

Nobuyuki Uchikoga, Shun-Ya Takahashi, Runcong Ke, Masashi Sonoyama, and Shigeki Mitaku

Electric charge balance mechanism of extended soluble proteins
Protein Sci 2005 14: 74-80. Published in Advance December 2, 2004, 10.1110/ps.04984505 [Abstract] [Full Text] [PDF]  

David Wildes and Susan Marqusee

Hydrogen exchange and ligand binding: Ligand-dependent and ligand-independent protection in the Src SH3 domain
Protein Sci 2005 14: 81-88. Published in Advance December 2, 2004, 10.1110/ps.04990205 [Abstract] [Full Text] [PDF]  

Farhana A. Chowdhury and Daniel P. Raleigh

A comparative study of the -subdomains of bovine and human -lactalbumin reveals key differences that correlate with molten globule stability
Protein Sci 2005 14: 89-96. Published in Advance December 2, 2004, 10.1110/ps.04977905 [Abstract] [Full Text] [PDF]  

Anatoly P. Dubnovitsky, Evangelia G. Kapetaniou, and Anastassios C. Papageorgiou

Enzyme adaptation to alkaline pH: Atomic resolution (1.08 Å) structure of phosphoserine aminotransferase from Bacillus alcalophilus
Protein Sci 2005 14: 97-110. [Abstract] [Full Text] [PDF]  

Patrick J. Fleming, Nicholas C. Fitzkee, Mihaly Mezei, Rajgopal Srinivasan, and George D. Rose

A novel method reveals that solvent water favors polyproline II over -strand conformation in peptides and unfolded proteins: conditional hydrophobic accessible surface area (CHASA)
Protein Sci 2005 14: 111-118. Published in Advance December 2, 2004, 10.1110/ps.041047005 [Abstract] [Full Text] [PDF]  

Shingo Hanaoka, Aritaka Nagadoi, and Yoshifumi Nishimura

Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities
Protein Sci 2005 14: 119-130. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Brian A. Joughin, Bruce Tidor, and Michael B. Yaffe

A computational method for the analysis and prediction of protein:phosphopeptide-binding sites
Protein Sci 2005 14: 131-139. Published in Advance December 2, 2004, 10.1110/ps.04964705 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Tae-Kang Kim and Roberta F. Colman

Ser⁹⁵, Asn⁹⁷, and Thr⁷⁸ are important for the catalytic function of porcine NADP-dependent isocitrate dehydrogenase
Protein Sci 2005 14: 140-147. Published in Advance December 2, 2004, 10.1110/ps.041091805 [Abstract] [Full Text] [PDF]  

Alla Korepanova, Fei P. Gao, Yuanzi Hua, Huajun Qin, Robert K. Nakamoto, and Timothy A. Cross

Cloning and expression of multiple integral membrane proteins from Mycobacterium tuberculosis in Escherichia coli
Protein Sci 2005 14: 148-158. [Abstract] [Full Text] [PDF]  

Benzhuo Lu, Chung F. Wong, and J. Andrew McCammon

Release of ADP from the catalytic subunit of protein kinase A: A molecular dynamics simulation study
Protein Sci 2005 14: 159-168. [Abstract] [Full Text] [PDF]  

Palasingam Paaventhan, Chunguang Kong, Jeremiah S. Joseph, Max C.M. Chung, and Prasanna R. Kolatkar

Structure of rhodocetin reveals noncovalently bound heterodimer interface
Protein Sci 2005 14: 169-175. Published in Advance December 2, 2004, 10.1110/ps.04945605 [Abstract] [Full Text] [PDF]  

Svetlana Pakhomova, Jochen Buck, and Marcia E. Newcomer

The structures of the unique sulfotransferase retinol dehydratase with product and inhibitors provide insight into enzyme mechanism and inhibition
Protein Sci 2005 14: 176-182. Published in Advance December 2, 2004, 10.1110/ps.041061105 [Abstract] [Full Text] [PDF]  

Y. Sato, M. Hata, S. Neya, and T. Hoshino

Computational analysis of the transient movement of helices in sensory rhodopsin II
Protein Sci 2005 14: 183-192. Published in Advance December 2, 2004, 10.1110/ps.04973805 [Abstract] [Full Text] [PDF]  

George Stan, Bernard R. Brooks, George H. Lorimer, and D. Thirumalai

Identifying natural substrates for chaperonins using a sequence-based approach
Protein Sci 2005 14: 193-201. Published in Advance December 2, 2004, 10.1110/ps.04933205 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Hajime Sugawara, Yoshiaki Kawano, Tomomitsu Hatakeyama, Tomoyuki Yamaya, Nobuo Kamiya, and Hitoshi Sakakibara

Crystal structure of the histidine-containing phosphotransfer protein ZmHP2 from maize
Protein Sci 2005 14: 202-208. Published in Advance December 2, 2004, 10.1110/ps.041076905 [Abstract] [Full Text] [PDF]  

Cong-Zhao Zhou, Philippe Meyer, Sophie Quevillon-Cheruel, Inès Li De La Sierra-Gallay, Bruno Collinet, Marc Graille, Karine Blondeau, Jean-Marie François, Nicolas Leulliot, Isabelle Sorel, Anne Poupon, Joel Janin, and Herman Van Tilbeurgh

Crystal structure of the YML079w protein from Saccharomyces cerevisiae reveals a new sequence family of the jelly-roll fold
Protein Sci 2005 14: 209-215. [Abstract] [Full Text] [PDF]  

PROTEIN STRUCTURE REPORTS:

Joe A. Gaspar, Chengsong Liu, Kenrick A. Vassall, Gabriela Meglei, Ricardo Stephen, Peter B. Stathopulos, Antonio Pineda-Lucena, Bin Wu, Adelinda Yee, Cheryl H. Arrowsmith, and Elizabeth M. Meiering

A novel member of the YchN-like fold: Solution structure of the hypothetical protein Tm0979 from Thermotoga maritima
Protein Sci 2005 14: 216-223. [Abstract] [Full Text] [PDF]  

David Pantoja-Uceda, Blanca López-Méndez, Seizo Koshiba, Makoto Inoue, Takanori Kigawa, Takaho Terada, Mikako Shirouzu, Akiko Tanaka, Motoaki Seki, Kazuo Shinozaki, Shigeyuki Yokoyama, and Peter Güntert

Solution structure of the rhodanese homology domain At4g01050(175–295) from Arabidopsis thaliana
Protein Sci 2005 14: 224-230. Published in Advance December 2, 2004, 10.1110/ps.041138705 [Abstract] [Full Text] [PDF]  

FOR THE RECORD:

Bon W. Koo and Andrew D. Miranker

Contribution of the intrinsic disulfide to the assembly mechanism of islet amyloid
Protein Sci 2005 14: 231-239. Published in Advance December 2, 2004, 10.1110/ps.041051205 [Abstract] [Full Text] [PDF]  

Leszek Rychlewski and Daniel Fischer

LiveBench-8: The large-scale, continuous assessment of automated protein structure prediction
Protein Sci 2005 14: 240-245. [Abstract] [Full Text] [PDF]  

Martin J. Blythe and Darren R. Flower

Benchmarking B cell epitope prediction: Underperformance of existing methods
Protein Sci 2005 14: 246-248. Published in Advance December 2, 2004, 10.1110/ps.041059505 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Scott D. Sharrow, Katherine A. Edmonds, Michael A. Goodman, Milos V. Novotny, and Martin J. Stone

Thermodynamic consequences of disrupting a water-mediated hydrogen bond network in a protein:pheromone complex
Protein Sci 2005 14: 249-256. [Abstract] [Full Text] [PDF]  

AWARD ADDRESSES:

Wolfgang Baumeister

A voyage to the inner space of cells
Protein Sci 2005 14: 257-269. [Full Text] [PDF]  

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