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Protein Science (2002), 11:65-71.
Copyright © 2002 The Protein Society

Structure determinants of substrate specificity of hydroxynitrile lyase from Manihot esculenta

Hanspeter Lauble1, Burkhard Miehlich1, Siegfried Förster1, Christoph Kobler1, Harald Wajant2 and Franz Effenberger1

1 Institut für Organische Chemie der Universität Stuttgart, D-70569 Stuttgart, Germany
2 Institut für Zellbiologie und Immunologie der Universität Stuttgart, D-70569 Stuttgart, Germany

Reprint requests to: Hanspeter Lauble, Institut für Organische Chemie, Universität Stuttgart, Pfaffenwaldring 55, D-70569 Stuttgart, Germany; e-mail: PeterLauble{at}t-online.de; fax: 49-711-685-4269.

Tryptophan 128 of hydroxynitrile lyase of Manihot esculenta (MeHNL) covers a significant part of a hydrophobic channel that gives access to the active site of the enzyme. This residue was therefore substituted in the mutant MeHNL-W128A by alanine to study its importance for the substrate specificity of the enzyme. Wild-type MeHNL and MeHNL-W128A showed comparable activity on the natural substrate acetone cyanohydrin (53 and 40 U/mg, respectively). However, the specific activities of MeHNL-W128A for the unnatural substrates mandelonitrile and 4-hydroxymandelonitrile are increased 9-fold and ~450-fold, respectively, compared with the wild-type MeHNL. The crystal structure of the MeHNL-W128A substrate-free form at 2.1 Å resolution indicates that the W128A substitution has significantly enlarged the active-site channel entrance, and thereby explains the observed changes in substrate specificity for bulky substrates. Surprisingly, the MeHNL-W128A–4-hydroxybenzaldehyde complex structure at 2.1 Å resolution shows the presence of two hydroxybenzaldehyde molecules in a sandwich type arrangement in the active site with an additional hydrogen bridge to the reacting center.

Keywords: Substrate specificity; active-site tunnel mutant; crystal structure


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J. Biol. Chem.Home page
K. Gruber, G. Gartler, B. Krammer, H. Schwab, and C. Kratky
Reaction Mechanism of Hydroxynitrile Lyases of the {alpha}/{beta}-Hydrolase Superfamily: THE THREE-DIMENSIONAL STRUCTURE OF THE TRANSIENT ENZYME-SUBSTRATE COMPLEX CERTIFIES THE CRUCIAL ROLE OF LYS236
J. Biol. Chem., May 7, 2004; 279(19): 20501 - 20510.
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