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Protein Science (2002), 11:46-57.
Copyright © 2002 The Protein Society

Unique oligomeric intermediates of bovine liver catalase

Koodathingal Prakash1, Shashi Prajapati1,3, Atta Ahmad1, S.K. Jain2 and Vinod Bhakuni1

1 Molecular and Structural Biology Division, Central Drug Research Institute, Lucknow 226 001, India
2 Center for Biotechnology, Hamdard University, Jamia Hamdard, New Delhi

Reprint requests to: Dr. Vinod Bhakuni, Molecular and Structural Biology Division, Central Drug Research Institute, Lucknow 226 001, India; e-mail: bhakuniv{at}rediffmail.com; fax: 91-522-223405.

Catalases, although synthesized from single genes and built up from only one type of subunit, exist in heterogeneous form with respect to their conformations and association states in biological systems. This heterogeneity is not of genetic origin, but rather reflects the instability of this oligomeric heme enzyme. To understand better the factors that stabilize the various association states of catalase, we performed studies on the multimeric intermediates that are stabilized during guanidine-hydrochloride- and urea-induced unfolding of bovine liver catalase (BLC). For the first time, we have observed an enzymatically active, folded dimer of native BLC. This dimer has slightly higher enzymatic activity and altered structural properties compared to the native tetramer. Comparative studies of the effect of NaCl, GdmCl, and urea on BLC show that cation binding to negatively charged groups present in amino acid side chains of the enzyme leads to stabilization of an enzymatically active, folded dimer of BLC. Besides the folded dimer, an enzymatically active expanded tetramer and a partially unfolded, enzymatically inactive dimer of BLC were also observed. A complete recovery of native enzyme was observed on refolding of expanded tetramers and folded dimers; however, a very low recovery (maximum of ~5%) of native enzyme was observed on refolding of partially unfolded dimers and fully unfolded monomers.

Keywords: Bovine liver catalase; multimeric enzyme; association states; denaturants; expanded tetramer; active dimers

Abbreviations: BLC, bovine liver catalase • GdmCl, guanidine hydrochloride • PAGE, polyacrylamide gel electrophoresis • SDS, sodium dodecyl sulphate • OD, optical density.


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